YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822271, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.86
Transmembrane Helix	13	37	0.84
Non-Cytoplasmic	38	74	0.65
Transmembrane Helix	75	95	0.85
Cytoplasmic	96	109	0.60
Transmembrane Helix	110	132	0.89
Non-Cytoplasmic	133	135	0.59
Transmembrane Helix	136	157	0.81
Cytoplasmic	158	164	0.55
Transmembrane Helix	165	186	0.83
Non-Cytoplasmic	187	222	0.60
Transmembrane Helix	223	245	0.95
Cytoplasmic	246	254	0.77
Transmembrane Helix	255	276	0.95
Non-Cytoplasmic	277	295	0.84
Transmembrane Helix	296	316	0.92
Cytoplasmic	317	335	0.78
Transmembrane Helix	336	352	0.83
Non-Cytoplasmic	353	356	0.84
Transmembrane Helix	357	377	0.94
Cytoplasmic	378	399	0.91
Transmembrane Helix	400	420	0.92
Non-Cytoplasmic	421	435	0.87
Transmembrane Helix	436	458	0.89
Cytoplasmic	459	472	0.83
Transmembrane Helix	473	491	0.92
Non-Cytoplasmic	492	500	0.67
Transmembrane Helix	501	521	0.65
Cytoplasmic	522	536	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQCPPQAP ESGFALSGSV LAEAAVVFAV VLSIHAAVWD RYSWCAVALA VQAFYVQYKW  60
   61 DRLLQQGNAV FQFRMSANSG LLPASMVMPL LGLVMKERCL TAGNPYFERF GIVVAATGMA 120
  121 VALFSSVLAL GITRPVPTNT CAISGLAGGI IIYIMKHSLS VGEVIEVLEV LLIFVYLNMI 180
  181 LLYLLPRCFT PGEALLVLGG ISFVLNQLIK RSLTESQGDP VDFFLLVVVV GMVLMGVFFS 240
  241 TLFVFMDSGT WASSIFFHLM TCVLGLGVVL PWLHWLIRRN PLLWLLQFLF YTETRIYLLA 300
  301 YWSLLATMAC LVVLYQNAKR SSSESKKHKA PTITRKYFHF IVVATYIPGI IFDRPLLYVA 360
  361 ATVCLAVFIF LEYVRYFRIK PLGHTLRSLL SLFLDERDSG PLILTHIYLL LGMSLPIWLI 420
  421 PRPCAQKGSL GGARALVPYA GVLAVGVGDT VASIFGSTMG EIRWPGTKKT FEGTMTSIFA 480
  481 QIISVALILI FDSGVDLNYS YAWILGSIST VSLLEAYTTQ IDNLLLPLYL LILLMA