YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FZD4_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	37	0.97
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	222	0.97
Transmembrane Helix	223	244	0.95
Cytoplasmic	245	254	0.86
Transmembrane Helix	255	274	0.84
Non-Cytoplasmic	275	306	0.83
Transmembrane Helix	307	331	0.80
Cytoplasmic	332	346	0.74
Transmembrane Helix	347	369	0.84
Non-Cytoplasmic	370	394	0.88
Transmembrane Helix	395	415	0.94
Cytoplasmic	416	435	0.91
Transmembrane Helix	436	458	0.93
Non-Cytoplasmic	459	478	0.90
Transmembrane Helix	479	499	0.92
Cytoplasmic	500	538	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWQGTGPSV RGMPGGVRLR LGLLLLQLLL LQRPALGFGD EEERRCDPIR IAMCQNLGYN  60
   61 VTKMPNLVGH ELQTDAELQL TTFTPLIQYG CSSQLQFFLC SVYVPMCTEK INIPIGPCGG 120
  121 MCLSVKRRCE PVLKEFGFAW PDSLNCSKFP PQNDHNHMCM EGPGDEEVPL PHKTPIQPGE 180
  181 ECHSVGTNSD QYIWVKRSLN CVLKCGYDAG LYSRSAKEFT DIWMAVWASL CFISTTFTVL 240
  241 TFLIDSSRFS YPERPIIFLS MCYNIYSIAY IVRLTVGRER ISCDFEEAAE PVLIQEGLKN 300
  301 TGCAIIFLLM YFFGMASSIW WVILTLTWFL AAGLKWGHEA IEMHSSYFHI AAWAIPAVKT 360
  361 IVILIMRLVD ADELTGLCYV GNQSLDALTG FVVAPLFTYL VIGTLFIAAG LVALFKIRSN 420
  421 LQKDGTKTDK LERLMVKIGV FSVLYTVPAT CVIACYFYEI SNWALFRYSA DDSNMAVEML 480
  481 KIFMSLLVGI TSGMWIWSAK TLHTWQKCSN RLVNSGKVKR EKRGNGWVKP GKGNETVV