YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T150A_RAT
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAWILLPVS LSAFSITGIW TVYAMAVMNR HVCPVENWSY NDSCSPDPAE QGGPKTCCTL  60
   61 DDVPLISKCG TYPPESCLFS LIGNMGAFMV ALICLLRYGQ LLEQNRHSWI NTTALITGCT 120
  121 NAAGLVVVGN FQVDHAKSLH YIGAGVAFPA GLLFVCLHCV LFYHGATTPL DMAMAYLRSV 180
  181 LAVIAFVTLV LSGVFFLHES SELQHGAALC EWVFVLDILI FYGTFSYEFG AVSSDTLVAA 240
  241 LQPAPGRACK SSGSSSTSTH LNCAPESIAM I

Type	Start	End	Confidence
Cytoplasmic	1	6	0.65
Transmembrane Helix	7	27	0.78
Non-Cytoplasmic	28	77	0.87
Transmembrane Helix	78	99	0.90
Cytoplasmic	100	108	0.79
Transmembrane Helix	109	131	0.88
Non-Cytoplasmic	132	140	0.76
Transmembrane Helix	141	164	0.89
Cytoplasmic	165	174	0.79
Transmembrane Helix	175	197	0.93
Non-Cytoplasmic	198	204	0.78
Transmembrane Helix	205	225	0.64
Cytoplasmic	226	271	0.66