YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109508874, gi...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLFKKGRLL AFLCSQVIVV ALFVHMSGHR HLFQREESRR PVHVLVLSSW RSGSSFVGQL  60
   61 FGQHPDVFYL MEPAWHVWMT FTSSTAWKLH MAVRDLLRSV FLCDMSVFDA YMNPGPRKQS 120
  121 SLFQWEQSRA LCSSPICDFF PADQISSPKH CKPLCSQLPF DMVEKACRSH SHVVLKEVRF 180
  181 LSLQALYPLL TDPSLNLHIV HLVRDPRAVF RSREHTTAEL MIDSHIVLGQ NLKMIKEEDQ 240
  241 PYYAMKIICK SHVDIVKAIQ TLPEVLQRRY LLLRYEDLVR APLAQTSRLY KFVGLDFLPH 300
  301 LQTWVHNVTR GKGMGQHAFH TNARDALNVS QAWRWSLPYT KVSQLQDDCG EAMDFLGYLQ 360
  361 VRSQQEQGNL SLNLLSSSRI LGQVFQEG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.46
Transmembrane Helix	9	29	0.48
Non-Cytoplasmic	30	388	0.95