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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GUC2C_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLLGLAVR LLLFQPTLMF WASQVRQKCH NGTYEISVLM MDNSAYKEPL QNLRDAVEEG  60
   61 LDIVRKRLRE AELNVTVNAT FIYSDGLIHK SGDCRSSTCE GLDLLREITR DRKMGCVLMG 120
  121 PSCTYSTFQM YLDTELNYPM ISAGSFGLSC DYKETLTRIL PPARKLMYFL VDFWKVNNAP 180
  181 FKTFSWNSSY VYKNGSEPED CFWYLNALEA GVSYFSEVLS FKDVLRRSEQ FQEILMGRNR 240
  241 KSNVIVMCGT PETFYNVKGD LKVADDTVVI LVDLFSNHYF EDDTRAPEYM DNVLVLTLPP 300
  301 EKFIANASVS GRFPSERSDF SLAYLEGTLL FGHMLQTFLE NGESVTTPKF ARAFRNLTFQ 360
  361 GLEGPVTLDD SGDIDNIMCL LYVSLDTRKY KVLMAYDTHK NQTIPVATSP NFIWKNHRLP 420
  421 NDVPGLGPQI LMIAVFTLTG IVVVLLLIAL LVLRKYRRDH ELRQKKWSHI PSENIFPLET 480
  481 NETNHVSLKI DDDRRRDTIQ RVRQCKYDKK KVILKDLKHC DGNFSEKQKI ELNKLLQSDY 540
  541 YNLTKFYGTV KLDTRIFGVV EYCERGSLRE VLNDTISYPD GTFMDWEFKI SVLNDIAKGM 600
  601 SYLHSSKIEV HGRLKSTNCV VDSRMVVKIT DFGCNSILPP KKDLWTAPEH LRQATISQKG 660
  661 DVYSFSIIAQ EIILRKETFY TLSCRDQNEK IFRVENSYGT KPFRPDLFLE TADEKELEVY 720
  721 LLVKSCWEED PEKRPDFKKI ESTLAKIFGL FHDQKNESYM DTLIRRLQLY SRNLEHLVEE 780
  781 RTQLYKAERD RADHLNFMLL PRLVVKSLKE KGIVEPELYE EVTIYFSDIV GFTTICKYST 840
  841 PMEVVDMLND IYKSFDQIVD HHDVYKVETI GDAYVVASGL PMRNGNRHAV DISKMALDIL 900
  901 SFMGTFELEH LPGLPVWIRI GVHSGPCAAG VVGIKMPRYC LFGDTVNTAS RMESTGLPLR 960
  961 IHMSSSTIAI LRRTDCQFLY EVRGETYLKG RGTETTYWLT GMKDQEYNLP TPPTVENQQR1020
 1021 LQTEFSDMIV SALQKRQASG VKSRRPTRVA SYKKGFLEYM QLNNSDHDST YF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle