YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWSNFFMQE EDRRRTAVGR RRAQEQQNLG LTPEREGKIK LGLLVAIVGA TLAVLAVGTE  60
   61 FWVELNTYKT NGSAVCEAAH LGLWKVCIKR LWQADVPAGR ETCGPAELPG EANCTYFKFF 120
  121 TTGENAHIFQ RTTKKEVNLA AAVIAVLGLT AMALGCLCVI MVLSKGAEFL LRLGAVCFGL 180
  181 SGLLLFVSLE VFRHSVRALL QGVNPETPPA PRLAYEYSWS LGCGVGAGLI LLLGGVCFLL 240
  241 LTLPSWPWRS LCPKRGGPTA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	62	0.88
Non-Cytoplasmic	63	138	0.91
Transmembrane Helix	139	162	0.92
Cytoplasmic	163	168	0.82
Transmembrane Helix	169	192	0.87
Non-Cytoplasmic	193	220	0.86
Transmembrane Helix	221	243	0.89
Cytoplasmic	244	260	0.82