YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYOX_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAWTVLFL GQLQFCPLLR CAPQAPREPP AAPGAWRQTI QWENNGQVFS LLSLGAQYQP  60
   61 QRRRDSSATA PRADGNAAAQ PRTPILLLRD NRTASARART PSPSGVAAGR PRPAARHWFQ 120
  121 VGFSPSGAGD GASRRAANRT ASPQPPQLSN LRPPSHVDRM VGDDPYNPYK YSDDNPYYNY 180
  181 YDTYERPRSG SRHRPGYGTG YFQYGLPDLV PDPYYIQAST YVQKMSMYNL RCAAEENCLA 240
  241 SSAYRADVRD YDHRVLLRFP QRVKNQGTSD FLPSRPRYSW EWHSCHQHYH SMDEFSHYDL 300
  301 LDASTQRRVA EGHKASFCLE DTSCDYGYHR RFACTAHTQG LSPGCYDTYA ADIDCQWIDI 360
  361 TDVQPGNYIL KVSVNPSYLV PESDYSNNVV RCEIRYTGHH AYASGCTISP Y

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	411	0.99