YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149038647, gi...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLYELVWR VLHLLFCLYR TLTSWLRVRF GTWNWIWRRC CRAASAAVLA PLGFTLRKLP  60
   61 AVGRNRRHHR HPHRGPGPAA THPRLRWRAD GRSLQKLPVH MGLVITEEVQ EPSFSDIASL 120
  121 VVWCMAVGIS YISVYDHQGI FKRNNSRLMD EILKQQQELL GQDCSKYSAE FANSNDKDDQ 180
  181 VLNCPSAVKV LSPEDGKADI VRAAQDFCQS VAQQQRRPTE LGVELLDSLL SSHGFPDPDL 240
  241 VLKFGPVDST LGFLPWQIRL TEIISLPSHS NISYEDLFSA LRQYAACEQR LGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.50
Transmembrane Helix	7	28	0.55
Cytoplasmic	29	34	0.41
Transmembrane Helix	35	56	0.52
Non-Cytoplasmic	57	293	0.54