YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NK2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTRAIVSDA NILSGLESNA TGVTAFSMPG WQLALWATAY LALVLVAVTG NATVIWIILA  60
   61 HERMRTVTNY FIINLALADL CMAAFNATFN FIYASHNIWY FGRAFCYFQN LFPITAMFVS 120
  121 IYSMTAIAAD RYMAIVHPFQ PRLSAPSTKA IIAGIWLVAL ALASPQCFYS TITVDEGATK 180
  181 CVVAWPNDNG GKMLLLYHLV VFVLIYFLPL LVMFGAYSVI GLTLWKRAVP RHQAHGANLR 240
  241 HLQAKKKFVK AMVLVVLTFA ICWLPYHLYF ILGTFQEDIY YHKFIQQVYL ALFWLAMSST 300
  301 MYNPIIYCCL NHRFRSGFRL AFRCCPWVTP TEEDRLELTH TPSLSRRVNR CHTKETLFMT 360
  361 GDMTHSEATN GQVGSPQDGE PAGPICKAQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.60
Transmembrane Helix	36	59	0.92
Cytoplasmic	60	69	0.86
Transmembrane Helix	70	92	0.90
Non-Cytoplasmic	93	110	0.80
Transmembrane Helix	111	129	0.91
Cytoplasmic	130	147	0.81
Transmembrane Helix	148	169	0.85
Non-Cytoplasmic	170	194	0.95
Transmembrane Helix	195	225	0.80
Cytoplasmic	226	247	0.96
Transmembrane Helix	248	270	0.91
Non-Cytoplasmic	271	289	0.90
Transmembrane Helix	290	310	0.94
Cytoplasmic	311	390	0.99