YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCTR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	143	0.99
Transmembrane Helix	144	167	0.87
Cytoplasmic	168	175	0.86
Transmembrane Helix	176	194	0.88
Non-Cytoplasmic	195	227	0.83
Transmembrane Helix	228	249	0.79
Cytoplasmic	250	256	0.80
Transmembrane Helix	257	276	0.95
Non-Cytoplasmic	277	296	0.90
Transmembrane Helix	297	319	0.91
Cytoplasmic	320	339	0.94
Transmembrane Helix	340	359	0.94
Non-Cytoplasmic	360	369	0.85
Transmembrane Helix	370	392	0.86
Cytoplasmic	393	449	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSTMRPRLS LLLLRLLLLT KAAHTVGVPP RLCDVRRVLL EERAHCLQQL SKEKKGALGP  60
   61 ETASGCEGLW DNMSCWPSSA PARTVEVQCP KFLLMLSNKN GSLFRNCTQD GWSETFPRPD 120
  121 LACGVNINNS FNERRHAYLL KLKVMYTVGY SSSLAMLLVA LSILCSFRRL HCTRNYIHMH 180
  181 LFVSFILRAL SNFIKDAVLF SSDDVTYCDA HKVGCKLVMI FFQYCIMANY AWLLVEGLYL 240
  241 HTLLAISFFS ERKYLQAFVL LGWGSPAIFV ALWAITRHFL ENTGCWDINA NASVWWVIRG 300
  301 PVILSILINF IFFINILRIL MRKLRTQETR GSETNHYKRL AKSTLLLIPL FGIHYIVFAF 360
  361 SPEDAMEVQL FFELALGSFQ GLVVAVLYCF LNGEVQLEVQ KKWRQWHLQE FPLRPVAFNN 420
  421 SFSNATNGPT HSTKASTEQS RSIPRASII