YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRM_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPALLLVPA ALASFVLAFG TGVEFVRFTS LRPLLGGIPE SGGPDARHGW LAALQDRSIL  60
   61 ASLAWDLCLL LLFVVQHSLM ATEAVKAWTS RYFGVLQRSL YVACTALALQ LVMRYWEATP 120
  121 RGPVLWEARA EPWATWVPLL CFVLHVVSWL LIFSILLVFD YAELMGLKQV YYHVLGLGEP 180
  181 LSLKSPRALR LFSHLRHPVC VELLTVLWVV PTLGTDRLLL ALLFTLYLGL AHGLDQQDLR 240
  241 YLRSQLQRKL QLLSRPQDGE AE

Type	Start	End	Confidence
Signal Peptide	1	18	0.61
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	58	0.73
Transmembrane Helix	59	80	0.82
Cytoplasmic	81	93	0.67
Transmembrane Helix	94	116	0.80
Non-Cytoplasmic	117	133	0.69
Transmembrane Helix	134	159	0.87
Cytoplasmic	160	193	0.69
Transmembrane Helix	194	212	0.46
Non-Cytoplasmic	213	217	0.40
Transmembrane Helix	218	234	0.68
Cytoplasmic	235	262	0.66