YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S6A11_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.89
Transmembrane Helix	54	73	0.71
Non-Cytoplasmic	74	81	0.69
Transmembrane Helix	82	101	0.92
Cytoplasmic	102	137	0.69
Transmembrane Helix	138	158	0.75
Non-Cytoplasmic	159	218	0.88
Transmembrane Helix	219	239	0.86
Cytoplasmic	240	247	0.89
Transmembrane Helix	248	270	0.89
Non-Cytoplasmic	271	300	0.91
Transmembrane Helix	301	321	0.91
Cytoplasmic	322	331	0.81
Transmembrane Helix	332	353	0.92
Non-Cytoplasmic	354	388	0.86
Transmembrane Helix	389	410	0.77
Cytoplasmic	411	432	0.85
Transmembrane Helix	433	455	0.89
Non-Cytoplasmic	456	464	0.80
Transmembrane Helix	465	488	0.93
Cytoplasmic	489	508	0.94
Transmembrane Helix	509	528	0.97
Non-Cytoplasmic	529	545	0.88
Transmembrane Helix	546	566	0.94
Cytoplasmic	567	627	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAEQALPLG NGKAAEEARG SEALGGGGGG AAGTREARDK AVHERGHWNN KVEFVLSVAG  60
   61 EIIGLGNVWR FPYLCYKNGG GAFLIPYVVF FICCGIPVFF LETALGQFTS EGGITCWRRV 120
  121 CPLFEGIGYA TQVIEAHLNV YYIIILAWAI FYLSNCFTTE LPWATCGHEW NTEKCVEFQK 180
  181 LNFSNYSHVS LQNATSPVME FWERRVLAIS DGIEHIGNLR WELALCLLAA WTICYFCIWK 240
  241 GTKSTGKVVY VTATFPYIML LILLIRGVTL PGASEGIKFY LYPDLSRLSD PQVWVDAGTQ 300
  301 IFFSYAICLG CLTALGSYNN YNNNCYRDCI MLCCLNSGTS FVAGFAIFSV LGFMAYEQGV 360
  361 PIAEVAESGP GLAFIAYPKA VTMMPLSPLW ATLFFMMLIF LGLDSQFVCV ESLVTAVVDM 420
  421 YPKVFRRGYR RELLILALSI VSYFLGLVML TEGGMYIFQL FDSYAASGMC LLFVAIFECV 480
  481 CIGWVYGSNR FYDNIEDMIG YRPLSLIKWC WKVVTPGICA GIFIFFLVKY KPLKYNNVYT 540
  541 YPAWGYGIGW LMALSSMLCI PLWIFIKLWK TEGTLPEKLQ KLTVPSADLK MRGKLGASPR 600
  601 MVTVNDCEAK VKGDGTISAI TEKETHF