YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S6A13_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	60	0.84
Non-Cytoplasmic	61	69	0.79
Transmembrane Helix	70	92	0.86
Cytoplasmic	93	115	0.85
Transmembrane Helix	116	141	0.79
Non-Cytoplasmic	142	203	0.97
Transmembrane Helix	204	224	0.93
Cytoplasmic	225	232	0.88
Transmembrane Helix	233	255	0.86
Non-Cytoplasmic	256	282	0.87
Transmembrane Helix	283	303	0.93
Cytoplasmic	304	313	0.86
Transmembrane Helix	314	338	0.88
Non-Cytoplasmic	339	365	0.92
Transmembrane Helix	366	388	0.82
Cytoplasmic	389	417	0.88
Transmembrane Helix	418	440	0.90
Non-Cytoplasmic	441	448	0.85
Transmembrane Helix	449	473	0.91
Cytoplasmic	474	493	0.91
Transmembrane Helix	494	513	0.96
Non-Cytoplasmic	514	531	0.90
Transmembrane Helix	532	551	0.95
Cytoplasmic	552	602	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNRVSGTTS NGETKPVCPV MEKVEEDGTL EREQWTNKME FVLSVAGEII GLGNVWRFPY  60
   61 LCYKNGGGAF FIPYLIFLFT CGIPVFFLET ALGQYTNQGG ITAWRKICPI FEGIGYASQM 120
  121 IVSLLNVYYI VVLAWALFYL FSSFTTDLPW GSCSHEWNTE NCVEFQKTNN SLNVTSENAT 180
  181 SPVIEFWERR VLKISDGIQH LGSLRWELVL CLLLAWIICY FCIWKGVKST GKVVYFTATF 240
  241 PYLMLVVLLI RGVTLPGAAQ GIQFYLYPNI TRLWDPQVWM DAGTQIFFSF AICLGCLTAL 300
  301 GSYNKYHNNC YRDCVALCIL NSSTSFVAGF AIFSILGFMS QEQGVPISEV AESGPGLAFI 360
  361 AYPRAVVMLP FSPLWACCFF FMVVLLGLDS QFVCVESLVT ALVDMYPRVF RKKNRREILI 420
  421 LIVSVVSFFI GLIMLTEGGM YVFQLFDYYA ASGMCLLFVA IFESLCVAWV YGASRFYDNI 480
  481 EDMIGYKPWP LIKYCWLFFT PAVCLATFLF SLIKYTPLTY NKKYTYPWWG DALGWLLALS 540
  541 SMVCIPAWSI YKLRTLKGPL RERLRQLVCP AEDLPQKSQP ELTSPATPMT SLLRLTELES 600
  601 NC