YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MARC2_RAT
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSSSTALA RLGLPGQPRS TWLGVAALGL AAVALGTVAW RRARPRRRRQ LQQVGTVSKV  60
   61 WIYPIKSCKG VSVCETECTD MGLRCGKVRD RFWMVVKEDG HMITARQEPR LVLVTITLEN 120
  121 NYLMLEAPGM EPIVLPIKLP SSNKIHDCRL FGLDIKGRDC GDEVARWFTS YLKTQAYRLV 180
  181 QFDTKMKGRT TKKLYPSESY LQNYEVAYPD CSPIHLISEA SLVDLNTRLQ KKVKMEYFRP 240
  241 NIVVSGCEAF EEDTWDELLI GDVEMKRVLS CPRCVLTTVD PDTGIIDRKE PLETLKSYRL 300
  301 CDPSVKSLYQ SSPLFGMYFS VEKIGSLRVG DPVYRMVD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.32
Transmembrane Helix	20	40	0.71
Non-Cytoplasmic	41	338	0.58