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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PTPRV_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLILLAAL LWLQGFLAED DACSSLEGSP DRQGGGPLLS VNVSSHGKST SLFLSWVAAE  60
   61 LGGFDYALSL RSVNSSGSPE GQQLQAHTNE SGFEFHGLVP GSRYQLKLTV LRPCWQNVTI 120
  121 TLTARTAPTV VRGLQLHSAG SPARLEASWS DAPGDQDSYQ LLLYHLESQT LACNVSVSPD 180
  181 TLSYSFGDLL PGTQYVLEVI TWAGSLHAKT SILQWTEPVP PDHLALRALG TSSLQAFWNS 240
  241 SEGATSFHLM LTDLLGGTNT TAVIRQGVST HTFLHLSPGT PHELKICASA GPHQIWGPSA 300
  301 TEWTYPSYPS DLVLTPLRNE LWASWKAGLG ARDGYVLKLS GPMESTSTLG PEECNAVFPG 360
  361 PLPPGHYTLQ LKVLAGPYDA WVEGSTWLAE SAALPREVPG ARLWLDGLEA SKQPGRRALL 420
  421 YSDDAPGSLG NISVPSGATH VIFCGLVPGA HYRVDIASST GDISQSISGY TSPLPPQSLE 480
  481 VISRSSPSDL TIAWGPAPGQ LEGYKVTWHQ DGSQRSPGDL VDLGPDTLSL TLKSLVPGSC 540
  541 YTVSAWAWAG NLDSDSQKIH SCTRPAPPTN LSLGFAHQPA ALKASWYHPP GGRDAFHLRL 600
  601 YRLRPLTLES EKVLPREAQN FSWAQLTAGC EFQVQLSTLW GSERSSSANA TGWTPPSAPT 660
  661 LVNVTSDAPT QLQVSWAHVP GGRSRYQVTL YQESTRTATS IMGPKEDGTS FLGLTPGTKY 720
  721 KVEVISWAGP LYTAAANVSA WTYPLIPNEL LVSMQAGSAV VNLAWPSGPL GQGACHAQLS 780
  781 DAGHLSWEQP LKLGQELFML RDLTPGHTIS MSVRCRAGPL QASTHLVVLS VEPGPVEDVL 840
  841 CHPEATYLAL NWTMPAGDVD VCLVVVERLV PGGGTHFVFQ VNTSGDALLL PNLMPTTSYR 900
  901 LSLTVLGRNS RWSRAVSLVC STSAEAWHPP ELAEPPQVEL GTGMGVTVMR GMFGKDDGQI 960
  961 QWYGIIATIN MTLAQPSREA INYTWYDHYY RGCESFLALL FPNPFYPEPW AGPRSWTVPV1020
 1021 GTEDCDNTQE ICNGRLKSGF QYRFSVVAFS RLNTPETILA FSAFSEPRAS ISLAIIPLTV1080
 1081 MLGAVVGSIV IVCAVLCLLR WRCLKGPRSE KDGFSKELMP YNLWRTHRPI PIHSFRQSYE1140
 1141 AKSAHAHQTF FQEFEELKEV GKDQPRLEAE HPDNIIKNRY PHVLPYDHSR VRLTQLPGEP1200
 1201 HSDYINANFI PGYSHTQEII ATQGPLKKTL EDFWRLVWEQ QVHVIIMLTV GMENGRVLCE1260
 1261 HYWPANSTPV THGHITIHLL AEEPEDEWTR REFQLQHGTE QKQRRVKQLQ FTTWPDHSVP1320
 1321 EAPSSLLAFV ELVQEQVQAT QGKGPILVHC SAGVGRTGTF VALLRLLRQL EEEKVADVFN1380
 1381 TVYILRLHRP LMIQTLSQYI FLHSCLLNKI LEGPPDSSDS GPISVMDFAQ ACAKRAANAN1440
 1441 AGFLKEYKLL KQAIKDGTGS LLPPPDYNQN SIVSRRHSQE QFALVEECPE DSMLEASLFP1500
 1501 GGPSGCDHVV LTGSAGPKEL WEMVWEHDAH VLVSLGLPDT KEKPPDIWPV EMQPIVTDMV1560
 1561 TVHRVSESNT TTGWPSTLFR VIHGESGKER QVQCLQFPCS ESGCELPANT LLTFLDAVGQ1620
 1621 CCFRGKSKKP GTLLSHSSKN TNQLGTFLAM EQLLQQAGTE RTVDVFNVAL KQSQACGLMT1680
 1681 PTLEQYIYLY NCLNSALLNG LPRAGKWPAP C

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