YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460911, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANSSIPLN GSEVVFYDST TSTVLWILSV VVLSITFVLG VLGNGLVIWV AGFRMAHTVT  60
   61 TICYLNLALG DFSFMATLPI HIISMVMKGK WLFGWFLCKF VHSIVHINLF ASVFLITLIA 120
  121 MDRCTCVLHP VWAQNHRTVG LARKVVVGAW ILSLLLTLPH FLFLTTVRDP RGEVHCTCNF 180
  181 ESVVANPEEQ LKVSIIVSTA IGIISFIIGF SLPMSFIAIC YGLMAVKICR KDFLNSSRPL 240
  241 RVLSAVAISF FMCWFPFQLI ILLGNIWNKE TPNSIHILLN PASTLASFNS CLNPILYVFL 300
  301 GQEFREKLIH SLSASLERAL QEDSVLNDGK SSNFSSCPAD SEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.92
Transmembrane Helix	25	50	0.88
Cytoplasmic	51	61	0.78
Transmembrane Helix	62	83	0.92
Non-Cytoplasmic	84	101	0.84
Transmembrane Helix	102	121	0.90
Cytoplasmic	122	140	0.84
Transmembrane Helix	141	163	0.88
Non-Cytoplasmic	164	199	0.94
Transmembrane Helix	200	225	0.87
Cytoplasmic	226	241	0.89
Transmembrane Helix	242	262	0.93
Non-Cytoplasmic	263	276	0.86
Transmembrane Helix	277	300	0.79
Cytoplasmic	301	343	0.89