YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CY24A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIEWAMWA NEQALASGLI LITGGIVATA GRFTQWYFGA YSIVAGVLIC LLEYPRGKRK  60
   61 KGSTMERCGQ KYLTAVVKLF GPLTRNYYVR AVLHLLLSVP AGFLLATILG TVCLAIASVI 120
  121 YLLAAIRGEQ WTPIEPKPKE RPQVGGTIKQ PPTNPPPRPP AEVRKKPSEA EEEAASAGGP 180
  181 QVNPIPVTDE VV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	36	0.71
Transmembrane Helix	37	55	0.89
Cytoplasmic	56	92	0.70
Transmembrane Helix	93	125	0.77
Non-Cytoplasmic	126	192	0.56