YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.68
Transmembrane Helix	16	34	0.71
Non-Cytoplasmic	35	136	0.88
Transmembrane Helix	137	156	0.92
Cytoplasmic	157	164	0.81
Transmembrane Helix	165	183	0.87
Non-Cytoplasmic	184	189	0.74
Transmembrane Helix	190	211	0.88
Cytoplasmic	212	220	0.83
Transmembrane Helix	221	243	0.90
Non-Cytoplasmic	244	248	0.81
Transmembrane Helix	249	269	0.91
Cytoplasmic	270	334	0.97
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	366	0.84
Transmembrane Helix	367	389	0.79
Cytoplasmic	390	398	0.72
Transmembrane Helix	399	416	0.91
Non-Cytoplasmic	417	426	0.56
Transmembrane Helix	427	446	0.74
Cytoplasmic	447	455	0.55
Transmembrane Helix	456	477	0.65
Non-Cytoplasmic	478	484	0.47
Transmembrane Helix	485	504	0.86
Cytoplasmic	505	551	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLKQV GGVGRFQLIQ VTMVVAPLLL MASHNTLQNF TAAIPPHHCR PPANANLSKD  60
   61 GGLEAWLPLD KQGQPESCLR FTSPQWGPPF YNGTEANGTR VTEPCIDGWV YDNSTFPSTI 120
  121 VTEWNLVCSH RAFRQLAQSL YMVGVLLGAM VFGYLADRLG RRKVLILNYL QTAVSGTCAA 180
  181 YAPNYTVYCV FRLLSGMSLA SIAINCMTLN VEWMPIHTRA YVGTLIGYVY SLGQFLLAGI 240
  241 AYAVPHWRHL QLVVSVPFFI AFIYSWFFIE SARWYSSSGR LDLTLRALQR VARINGKQEE 300
  301 GAKLSIEVLR TSLQKELTLS KGQASAMELL RCPTLRHLFL CLSMLWFATS FAYYGLVMDL 360
  361 QGFGVSMYLI QVIFGAVDLP AKFVCFLVIN SMGRRPAQMA SLLLAGICIL VNGIIPKSHT 420
  421 IIRTSLAVLG KGCLASSFNC IFLYTGELYP TVIRQTGLGM GSTMARVGSI VSPLVSMTAE 480
  481 FYPSMPLFIF GAVPVVASAV TALLPETLGQ PLPDTVQDLK SRSRGKQNQQ QQEQQKQMMP 540
  541 LQASTQEKNG L