YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO1A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	37	0.92
Non-Cytoplasmic	38	56	0.80
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	86	0.86
Transmembrane Helix	87	109	0.92
Non-Cytoplasmic	110	159	0.93
Transmembrane Helix	160	182	0.75
Cytoplasmic	183	192	0.84
Transmembrane Helix	193	213	0.81
Non-Cytoplasmic	214	241	0.85
Transmembrane Helix	242	265	0.92
Cytoplasmic	266	312	0.94
Transmembrane Helix	313	332	0.86
Non-Cytoplasmic	333	352	0.85
Transmembrane Helix	353	376	0.87
Cytoplasmic	377	387	0.88
Transmembrane Helix	388	408	0.88
Non-Cytoplasmic	409	511	0.94
Transmembrane Helix	512	535	0.92
Cytoplasmic	536	546	0.85
Transmembrane Helix	547	569	0.82
Non-Cytoplasmic	570	599	0.83
Transmembrane Helix	600	619	0.88
Cytoplasmic	620	661	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSEKRVAT HGVRCFAKIK MFLLALTCAY VSKSLSGTYM NSMLTQIERQ FGIPTSIVGL  60
   61 INGSFEIGNL LLIIFVSYFG TKLHRPIMIG VGCAVMGLGC FLISLPHFLM GQYEYETILP 120
  121 TSNVSSNSFF CVENRSQTLN PTQDPSECVK EMKSLMWIYV LVGNIIRGIG ETPIMPLGIS 180
  181 YIEDFAKSEN SPLYIGILET GMTIGPLIGL LLASSCANIY VDIESVNTDD LTITPTDTRW 240
  241 VGAWWIGFLV CAGVNILTSF PFFFFPKTLP KEGLQENVDG TENAKEKKHR KKAKEEKRGI 300
  301 TKDFFVFMKS LSCNPIYMLF ILISVLQFNA FINSFTFMPK YLEQQYGKST AEVVFLMGLY 360
  361 MLPPICLGYL IGGLIMKKFK VTVKKAAHLA FWLCLSEYLL SFLSYVMTCD NFPVAGLTTS 420
  421 YEGVQHQLYV ENKVLADCNT RCNCSTNTWD PVCGDNGLAY MSACLAGCEK SVGTGTNMVF 480
  481 QNCSCIQSSG NSSAVLGLCN KGPDCANKLQ YFLIIAIFGC FIYSLAGIPG YMVLLRCIKS 540
  541 EEKSLGVGLH AFCIRILAGI PAPIYFGALI DRTCLHWGTL KCGEPGACRM YDINSFRRLY 600
  601 LGLPAALRGA SFVPAFFILR LTRTFQFPGD IESSKTDHAE MKLTLKESEC TEVLRSKVTE 660
  661 D