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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ITAD_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGVVILLC GWVLASCHGS NLDVEEPIVF REDAASFGQT VVQFGGSRLV VGAPLEAVAV  60
   61 NQTGRLYDCA PATGMCQPIV LRSPLEAVNM SLGLSLVTAT NNAQLLACGP TAQRACVKNM 120
  121 YAKGSCLLLG SSLQFIQAVP ASMPECPRQE MDIAFLIDGS GSINQRDFAQ MKDFVKALMG 180
  181 EFASTSTLFS LMQYSNILKT HFTFTEFKNI LDPQSLVDPI VQLQGLTYTA TGIRTVMEEL 240
  241 FHSKNGSRKS AKKILLVITD GQKYRDPLEY SDVIPAADKA GIIRYAIGVG DAFQEPTALK 300
  301 ELNTIGSAPP QDHVFKVGNF AALRSIQRQL QEKIFAIEGT QSRSSSSFQH EMSQEGFSSA 360
  361 LTSDGPVLGA VGSFSWSGGA FLYPPNTRPT FINMSQENVD MRDSYLGYST AVAFWKGVHS 420
  421 LILGAPRHQH TGKVVIFTQE ARHWRPKSEV RGTQIGSYFG ASLCSVDVDR DGSTDLVLIG 480
  481 APHYYEQTRG GQVSVFPVPG VRGRWQCEAT LHGEQGHPWG RFGVALTVLG DVNGDNLADV 540
  541 AIGAPGEEES RGAVYIFHGA SRLEIMPSPS QRVTGSQLSL RLQYFGQSLS GGQDLTQDGL 600
  601 VDLAVGAQGH VLLLRSLPLL KVELSIRFAP MEVAKAVYQC WERTPTVLEA GEATVCLTVH 660
  661 KGSPDLLGNV QGSVRYDLAL DPGRLISRAI FDETKNCTLT GRKTLGLGDH CETVKLLLPD 720
  721 CVEDAVSPII LRLNFSLVRD SASPRNLHPV LAVGSQDHIT ASLPFEKNCK QELLCEGDLG 780
  781 ISFNFSGLQV LVVGGSPELT VTVTVWNEGE DSYGTLVKFY YPAGLSYRRV TGTQQPHQYP 840
  841 LRLACEAEPA AQEDLRSSSC SINHPIFREG AKTTFMITFD VSYKAFLGDR LLLRAKASSE 900
  901 NNKPDTNKTA FQLELPVKYT VYTLISRQED STNHVNFSSS HGGRRQEAAH RYRVNNLSPL 960
  961 KLAVRVNFWV PVLLNGVAVW DVTLSSPAQG VSCVSQMKPP QNPDFLTQIQ RRSVLDCSIA1020
 1021 DCLHFRCDIP SLDIQDELDF ILRGNLSFGW VSQTLQEKVL LVSEAEITFD TSVYSQLPGQ1080
 1081 EAFLRAQVET TLEEYVVYEP IFLVAGSSVG GLLLLALITV VLYKLGFFKR QYKEMLDGKA1140
 1141 ADPVTAGQAD FGCETPPYLV S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle