YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBP_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLVTLALL AGPTCRAQNI LGNNVGTYFY VAGEEHGQLR GIRIFLTVID LIKGIQLRFG  60
   61 GNWSDVYGSR SLKYKEFLLE DGEHVTQVSG TRKLCLTSLS FTTNKGRVVT FGVRRGLSFN 120
  121 ESGGSDKYLV TVNGLYAPGL CLNGMGFKWK NIHDDFDDND DDKEDDDDEH DDDNEEDHGD 180
  181 KDNDNDHDDD HDDDDDDKED DNEEDVDDER DDKDDDEEDD DNDKENDKDD GEGSGDDDDN 240
  241 DDEDDDKDDD GGSGDDGDDG DDDEDDDGGD DDNGDEEEE

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	279	0.99