YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD7_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLQLLG FSMAMLGWVG LIASTAIPQW QMSSYAGDNI ITAQAMYKGL WMECVTQSTG  60
   61 MMSCKMYDSV LALPAATQAT RALMIVSLVL GFLAMFVATM GMKCTRCGGD DKVKKARIAM 120
  121 TGGIIFIVAG LAALVACSWI GHQIVTDFYN PLTPMNIKYE FGPAIFIGWA GSALVLLGGA 180
  181 LLSCSCPGSE SKAAYRAPRS YPKSNSSKEY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	27	0.95
Non-Cytoplasmic	28	78	0.94
Transmembrane Helix	79	102	0.87
Cytoplasmic	103	119	0.91
Transmembrane Helix	120	142	0.92
Non-Cytoplasmic	143	164	0.88
Transmembrane Helix	165	186	0.93
Cytoplasmic	187	211	0.96