YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT2B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSYKMSEQ STISEHILQK TCDHLILTDR SGLKAESAAE EMKQTAENQG NTVHWAALLI  60
   61 FAVIIPTIGG NILVILAVSL EKRLQYATNY FLMSLAVADL LVGLFVMPIA LLTIMFEATW 120
  121 PLPLALCPAW LFLDVLFSTA SIMHLCAISL DRYIAIKKPI QANQCNSRTT AFVKITVVWL 180
  181 ISIGIAIPVP IKGIEADVVN AHNITCELTK DRFGSFMLFG SLAAFFAPLT IMIVTYFLTI 240
  241 HALRKKAYLV RNRPPQRLTR WTVSTVLQRE DSSFSSPEKM VMLDGSHKDK ILPNSTDETL 300
  301 MRRMSSAGKK PAQTISNEQR ASKVLGIVFL FFLLMWCPFF ITNVTLALCD SCNQTTLKTL 360
  361 LQIFVWVGYV SSGVNPLIYT LFNKTFREAF GRYITCNYQA TKSVKVLRKC SSTLYFGNSM 420
  421 VENSKFFTKH GIRNGINPAM YQSPVRLRSS TIQSSSIILL NTFLTENDGD KVEDQVSYI

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.98
Transmembrane Helix	55	78	0.91
Cytoplasmic	79	89	0.86
Transmembrane Helix	90	114	0.87
Non-Cytoplasmic	115	129	0.78
Transmembrane Helix	130	150	0.91
Cytoplasmic	151	169	0.90
Transmembrane Helix	170	191	0.90
Non-Cytoplasmic	192	221	0.89
Transmembrane Helix	222	243	0.90
Cytoplasmic	244	323	0.99
Transmembrane Helix	324	347	0.86
Non-Cytoplasmic	348	362	0.83
Transmembrane Helix	363	382	0.89
Cytoplasmic	383	479	0.92