YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157821093, gi...
Protein type:	Transmembrane
Type Confidence:	0.44
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYREQVIHK QLTRVLGVPD LVFLLFSFIS TANNSTHALE YVLFRPNRRY NQRISLAIPN  60
   61 LGNTSQQEYK VSSVPNTSQS YAKVIKEHGT DFFDKDGVMK DIRAIYQVYN ALQEKVQAVC 120
  121 ADVEKSERVV ESCQAEVNKL RRQITQKKNE KEQERRLQQA LLSRQMPSES LEPAFSPRMP 180
  181 YSGFSAEGRS TLADAEPSDP PPPYSDFHPN NQESTLSHSR IERSVFMPRP QAVGSSNYAS 240
  241 TSAGLKFTGS GADLLPSQSA AGDSGEETDD SDYENLIDPA ESPHSEYSHS KNSRPTTHPD 300
  301 EDPRNTQTSQ I

Type	Start	End	Confidence
Cytoplasmic	1	11	0.41
Transmembrane Helix	12	32	0.34
Non-Cytoplasmic	33	311	0.97