YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR12_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDPKVNLS GLPRDCIEAG TPENISAAVP SQGSVVESEP ELVVNPWDIV LCSSGTLICC  60
   61 ENAVVVLIIF HSPSLRAPMF LLIGSLALAD LLAGLGLIIN FVFAYLLQSE ATKLVTIGLI 120
  121 VASFSASVCS LLAITVDRYL SLYYALTYHS ERTVTFTYVM LVMLWGTSTC LGLLPVMGWN 180
  181 CLRDESTCSV VRPLTKNNAA ILSISFLFMF ALMLQLYIQI CKIVMRHAHQ IALQHHFLAT 240
  241 SHYVTTRKGI STLALILGTF AACWMPFTLY SLIADYTYPS IYTYATLLPA TYNSIINPVI 300
  301 YAFRNQEIQK ALCLICCGCI PNTLSQRARS PSDV

Type	Start	End	Confidence
Cytoplasmic	1	79	0.52
Transmembrane Helix	80	104	0.88
Non-Cytoplasmic	105	113	0.66
Transmembrane Helix	114	136	0.92
Cytoplasmic	137	153	0.75
Transmembrane Helix	154	177	0.89
Non-Cytoplasmic	178	198	0.76
Transmembrane Helix	199	218	0.95
Cytoplasmic	219	249	0.75
Transmembrane Helix	250	273	0.85
Non-Cytoplasmic	274	280	0.77
Transmembrane Helix	281	301	0.73
Cytoplasmic	302	334	0.74