YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT1F_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLNSSDQN LTSEELLNRM PSKILVSLTL SGLALMTTTI NCLVITAIIV TRKLHHPANY  60
   61 LICSLAVTDF LVAVLVMPFS IVYIVRESWI MGQGLCDLWL SVDIICCTCS ILHLSAIALD 120
  121 RYRAITDAVE YARKRTPRHA GITITTVWVI SVFISVPPLF WRHQGNSRDD QCIIKHDHIV 180
  181 STIYSTFGAF YIPLVLILIL YYKIYRAART LYHKRQASRM IKEELNGQVL LESGEKSIKL 240
  241 VSTSYMLEKS LSDPSTDFDR IHSTVKSPRS ELKHEKSWRR QKISGTRERK AATTLGLILG 300
  301 AFVICWLPFF VKELVVNICE KCKISEEMSN FLAWLGYLNS LINPLIYTIF NEDFKKAFQK 360
  361 LVRCRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.85
Transmembrane Helix	28	50	0.90
Cytoplasmic	51	59	0.80
Transmembrane Helix	60	82	0.91
Non-Cytoplasmic	83	97	0.78
Transmembrane Helix	98	119	0.85
Cytoplasmic	120	139	0.92
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	182	0.95
Transmembrane Helix	183	205	0.88
Cytoplasmic	206	290	0.99
Transmembrane Helix	291	310	0.95
Non-Cytoplasmic	311	330	0.94
Transmembrane Helix	331	351	0.73
Cytoplasmic	352	366	0.78