YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR5_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLSLASTP SWNASAASSG NHNWSLVGSA SPMGARAVLV PVLYLLVCTV GLSGNTLVIY  60
   61 VVLRHAKMKT VTNVYILNLA VADVLFMLGL PFLATQNAVV SYWPFGSFLC RLVMTLDGIN 120
  121 QFTSIFCLMV MSVDRYLAVV HPLRSARWRR PRVAKMASAA VWVFSLLMSL PLLVFADVQE 180
  181 GWGTCNLSWP EPVGLWGAAF ITYTSVLGFF GPLLVICLCY LLIVVKVKAA GMRVGSSRRR 240
  241 RSEPKVTRMV VVVVLVFVGC WLPFFIVNIV NLAFTLPEEP TSAGLYFFVV VLSYANSCAN 300
  301 PLLYGFLSDN FRQSFRKVLC LRRGYGMEDA DAIEPRPDKS GRPQATLPTR SCEANGLMQT 360
  361 SRI

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.70
Transmembrane Helix	40	63	0.89
Cytoplasmic	64	73	0.88
Transmembrane Helix	74	95	0.93
Non-Cytoplasmic	96	117	0.83
Transmembrane Helix	118	138	0.86
Cytoplasmic	139	155	0.88
Transmembrane Helix	156	176	0.90
Non-Cytoplasmic	177	198	0.89
Transmembrane Helix	199	225	0.90
Cytoplasmic	226	245	0.94
Transmembrane Helix	246	267	0.94
Non-Cytoplasmic	268	283	0.87
Transmembrane Helix	284	307	0.91
Cytoplasmic	308	363	0.98