YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPATLPLG GEDTTWTPGI NASWAPDEEE DAVRSDGTGT AGMVTIQCIY ALVCLVGLVG  60
   61 NALVIFVILR YAKMKTATNI YLLNLAVADE LFMLSVPFVA SAAALRHWPF GAVLCRAVLS 120
  121 VDGLNMFTSV FCLTVLSVDR YVAVVHPLRA ATYRRPSVAK LINLGVWLAS LLVTLPIAVF 180
  181 ADTRPARGGE AVACNLHWPH PAWSAVFVIY TFLLGFLLPV LAIGLCYLLI VGKMRAVALR 240
  241 AGWQQRRRSE KKITRLVLMV VTVFVLCWMP FYVVQLLNLF VTSLDATVNH VSLILSYANS 300
  301 CANPILYGFL SDNFRRSFQR VLCLRCCLLE TTGGAEEEPL DYYATALKSR GGPGCICPPL 360
  361 PCQQEPMQAE PACKRVPFTK TTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.94
Transmembrane Helix	48	69	0.95
Cytoplasmic	70	79	0.86
Transmembrane Helix	80	104	0.84
Non-Cytoplasmic	105	122	0.73
Transmembrane Helix	123	143	0.83
Cytoplasmic	144	160	0.86
Transmembrane Helix	161	180	0.94
Non-Cytoplasmic	181	206	0.93
Transmembrane Helix	207	231	0.95
Cytoplasmic	232	252	0.95
Transmembrane Helix	253	274	0.93
Non-Cytoplasmic	275	290	0.86
Transmembrane Helix	291	310	0.77
Cytoplasmic	311	384	0.81