YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVTYPSSV PTTLDPGNAS SAWPLDTSLG NASAGTSLAG LAVSGILISL VYLVVCVVGL  60
   61 LGNSLVIYVV LRHTSSPSVT SVYILNLALA DELFMLGLPF LAAQNALSYW PFGSLMCRLV 120
  121 MAVDGINQFT SIFCLTVMSV DRYLAVVHPT RSARWRTAPV ARMVSAAVWV ASAVVVLPVV 180
  181 VFSGVPRGMS TCHMQWPEPA AAWRTAFIIY TAALGFFGPL LVICLCYLLI VVKVRSTTRR 240
  241 VRAPSCQWVQ APACQRRRRS ERRVTRMVVA VVALFVLCWM PFYLLNIVNV VCPLPEEPAF 300
  301 FGLYFLVVAL PYANSCANPI LYGFLSYRFK QGFRRILLRP SRRVRSQEPG SGPPEKTEEE 360
  361 EDEEEEERRE EEERRMQRGQ EMNGRLSQIA QPGPSGQQQR PCTGTAKEQQ LLPQEATAGD 420
  421 KASTLSHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.71
Transmembrane Helix	38	71	0.77
Cytoplasmic	72	81	0.81
Transmembrane Helix	82	103	0.88
Non-Cytoplasmic	104	124	0.77
Transmembrane Helix	125	145	0.82
Cytoplasmic	146	164	0.85
Transmembrane Helix	165	185	0.92
Non-Cytoplasmic	186	205	0.92
Transmembrane Helix	206	231	0.92
Cytoplasmic	232	263	0.97
Transmembrane Helix	264	285	0.92
Non-Cytoplasmic	286	302	0.87
Transmembrane Helix	303	325	0.92
Cytoplasmic	326	428	0.98