YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP3AI_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIIPNLSIE TWVLLATSLM LFYIYGTYSH GLFKKLGIPG PKPVPLFGTI FNYGDGMWKF  60
   61 DDDCYKKYGK IWGFYEGPQP FLAIMDPEII KMVLVKECYS VFTNRRCFGP MGFMKKAITM 120
  121 SEDEEWKRLR TILSPTFTSG KLKEMFPLMR QYGDTLLKNL RREEAKGEPI NMKDIFGAYS 180
  181 MDVITGTSFG VNVDSLNNPQ DPFVQKAKKI LKFQIFDPFL LSVVLFPFLT PIYEMLNFSI 240
  241 FPRQSMNFFK KFVKTMKKNR LDSNQKNRVD FLQLMMNTQN SKGQESQKAL SDLEMAAQAI 300
  301 IFIFGGYDAT STSISFIMYE LATRPNVQKK LQNEIDRALP NKAPVTYDAL MEMEYLDMVV 360
  361 NESLRLYPIA TRLDRVSKKD VEINGVFIPK GTVVTIPIYP LHRNPEYWLE PEEFNPERFS 420
  421 KENKGSIDPY VYLPFGNGPR NCIGMRFALI SMKLAVIGVL QNFNIQPCEK TQIPLKISRQ 480
  481 PIFQPEGPII LKLVSRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.72
Transmembrane Helix	8	29	0.75
Cytoplasmic	30	214	0.80
Transmembrane Helix	215	235	0.76
Non-Cytoplasmic	236	497	0.80