YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AREG_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTPSLSLAL SVLSLLVLGS GHYAAGLELN GTSSGKGEPS SGDHSAGGLV VSEVSTISEM  60
   61 PSGSELSTGD YDYSEEYDNE PQISGYIVDD SVRVEQVIKP KENKTEGEKS SEKPKRKKKG 120
  121 GKGGKGRRNR KKKKNPCAAK FQNFCIHGEC RYIENLEVVT CHCHQDYFGE RCGEKTMKTQ 180
  181 KKDDSDLSKI ALAAIIVFVS AVSVAAIGII TAVLLRKRFF REYEEAEERR RLRQENGTAH 240
  241 AIA

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	189	0.99
Transmembrane Helix	190	214	0.90
Cytoplasmic	215	243	0.97