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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AT1A4_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGKETAAT SEQKPRPTLR ASNTNRQPKV KRRKKDLEEL KKEVVMDDHK LTLDELSAKY  60
   61 SVDLTKGLSV TDAQEILTLN GPNVLTPPPT TPEWIKFCKQ LFGGFSLLLW TGSLLCFLAY 120
  121 GIHVSYYQEN ANKDNLYLGI VLSAVVIITG CFSYYQEAKS SKIMESFKTM VPQQALVIRD 180
  181 GEKMQINVRD VVLGDLVEVK GGDQVPADIR VIAAQGCKVD NSSLTGESEP QSRCPDCTHE 240
  241 NPLETRNIIF FSTNCVEGTA RGVVIATGDH TVMGRIASLT SGLTMGKTPI ATEIEHFIHI 300
  301 ITAVAVFLGV TFFFLSLILG YTWLDAVIFL IGIIVANVPE GLLATVTVCL TLTAKRMARK 360
  361 NCLVKNLEAV ETLGSTSTIC SDKTGTLTQN RMTVAHLWFD KTVYEADTSE EQTTGKTFPK 420
  421 SSDTWFYLAR IAGLCNRADF KPHQESLPIT KRTTTGDASE SALLKFIEQS YSPVSEMRQK 480
  481 NPKVAEIPFN STNKYQMSIH LLEDNSEAHV LLMKGAPERI LDFCSSFLLN GQEYPMDEEM 540
  541 KTDFQNAYIE LGGLGERVLG FCFLNLPSNF SKGFQFNTEE LNFPMENLCF AGLISMIDPP 600
  601 RTAVPDAVSK CRSAGIKVIM VTGDHPITAK AIAKSVGIIS EANETAEDIA ARLNISISQV 660
  661 SNKSIKAIVV HGSELKDMDS GQLDNILKSY KEIVFARTSP QQKLIIVEGC QRLGAIVAVT 720
  721 GDGVNDSPAL KKADIGIAMG ITGSDVSKQA ADMILLDDNF ASIVTGVEEG RLIFDNLKKS 780
  781 IAYTLTSNIP EITPFLLFIV LSIPLPLGTI TILCIDLGTD MVPAISLAYE TPESDIMKRL 840
  841 PRNPKTDNLV NDRLIGMAYG QIGMIQALAG FFTYFVILAE NGFKPLDLLG IRLYWDDTNL 900
  901 NDLEDTYGQQ WTYEQRKVVE FTCQTAFFIS IVIVQWADLI ICKTRRNSLF KQGMKNKVLI 960
  961 FGLLEETILA ACLSYIPGMD VALRMYPLKI NWWFCALPYS VLIFIYDEVR KLIIRRRPGG1020
 1021 WLEKETYY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle