YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCSK1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSPLLCGP RAGGVGLLVL LLLGLLRLPP TLSARPVKEP RSLSAASAPL AETSTPLRLR  60
   61 RAVPRGEAAG AVQELARALA HLLEAERQER ARAEAQEAED QQARVLAQLL RAWGSPRASD 120
  121 PPLAPDDDPD APAAQLARAL LRARLDPAAL AAQLVPAPAP AAALRPRPPV YDDGPTGPDV 180
  181 EDAADETPDV DPELLRYLLG RILTGSSEPE AAPAPRRLRR AVDQDLGPEV PPENVLGALL 240
  241 RVKRLENSSP QAPARRLLPP

Type	Start	End	Confidence
Signal Peptide	1	33	0.99
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	260	0.99