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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCAN_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAESVWASG LLVLWLLLLV SGDQDTQDTT TTEKGLHMLK SGSGPIQAAL AELVALPCFF  60
   61 TLQPRQSPLG DIPRIKWTKV QTASGQRQDL PILVAKDNVV RVAKGWQGRV SLPAYPRHRA 120
  121 NATLLLGPLR ASDSGLYRCQ VVKGIEDEQD LVTLEVTGVV FHYRAARDRY ALTFAEAQEA 180
  181 CHLSSATIAA PRHLQAAFED GFDNCDAGWL SDRTVRYPIT QSRPGCYGDR SSLPGVRSYG 240
  241 RRDPQELYDV YCFARELGGE VFYVGPARRL TLAGARALCQ RQGAALASVG QLHLAWHEGL 300
  301 DQCDPGWLAD GSVRYPIQTP RRRCGGSAPG VRTVYRFANR TGFPAPGARF DAYCFRAHHH 360
  361 TPQRGDSEIP SSGDEGEIVS AEGPPAPELK PRLGEQEVIT PDFQEPLVSS GEDEPLDLTR 420
  421 TQASQETLAS TPGGPTLASW LLTGVTSSTG VPSPSSLGVD MEETTPSGTQ VAPTPTMRRG 480
  481 RFKGLNGRHF QQQGPEDQLL EAAEASAQPP TLEVTADHMG PSAATEALES DQSHSPWAIL 540
  541 TNEVDVPGAG SLGSRSLPES RKWSPSLISP STVPSTDSTP GLKPGADEAP GVKSAIHHPP 600
  601 WLPSEPAVPS SIPSEALSAV SLQASPGDGS PDFPIVAMLR APKLWLLPHS TLVPNVSPIP 660
  661 LSPASPLPSS VPEEQAVRPV SFGAEDPETP FQTTMAAPGE ASHGSPEADS IEIEGISSMQ 720
  721 ATKHPISGPW ASLDSSNVTV NPVPSDAGIL GTESGVLDLP GSPTSDGQAT VDMVLATWLP 780
  781 LPGHGLDTGS QSTPMEAHGV TMSVEPTVAL EGGATKDPME ATMDVVPSTV DATSGSEPKS 840
  841 SISSTHVVVT AAGDQGTPTL TPTSSEGQVV AQESLGTLTS LPSHPWSSLA SSMDEVASVS 900
  901 SGEPTRLWDI PSTLIPVSLG LDESDLKVVA ESPGLEGFWE EVASGQEDPT DPCENNPCLH 960
  961 GGTCRTNGTM YGCSCDQGYA GENCEIDIDD CLCSPCENGG TCIDEVNGFI CLCLPSYGGN1020
 1021 LCEKDTEGCD RGWHKFQGHC YRYFAHRRAW EDAERDCRRR AGHLTSVHSP EEHKFINSFG1080
 1081 HENSWIGLND RTVERDFQWT DNTGLQYENW REKQPDNFFA GGEDCVVMVA HENGRWNDVP1140
 1141 CNYNLPYVCK KGTVLCGPPP AVENASLVGV RKVKYNVHAT VRYQCDEGFS QHHVATIRCR1200
 1201 SNGKWDRPQI VCTKPRRSHR MRRHHHHPHR HHKPRKEHRK HKRHPAEDWE KDEGDFC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle