YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF1_RAT
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVMALTVL RSRITRWPQW ACAGPAPFCA VRRSVFGFSV RSGMVCRPHR CCSSTAETAA  60
   61 AKAEDDSFLQ WFLLFIPATA FGLGTWQVQR RKWKLKLIAE LESRVMAEPI PLPADPMELK 120
  121 NLEYRPVKVR GHFDHSKELY IMPRTMVDPV REARDAGRLS STESGAYVVT PFHCSDLGVT 180
  181 ILVNRGFVPR KKVNPETRQQ GQVLGEVDLV GIVRLTENRK PFVPENNPER SLWYYRDLDA 240
  241 MAKRTGTDPI FIDADFNSTT PGGPIGGQTR VTLRNEHMQY IITWYGLCAA TSYLWFRKFV 300
  301 RRTPGV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.65
Transmembrane Helix	17	35	0.53
Non-Cytoplasmic	36	67	0.83
Transmembrane Helix	68	88	0.71
Cytoplasmic	89	279	0.64
Transmembrane Helix	280	296	0.69
Non-Cytoplasmic	297	306	0.47