YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CMLO1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPYHIRQYQ DSDHKSVVDV FTKGMEEHIP STFRHMLMLP RTLLLLLGVP LALVLVSGSW  60
   61 LLAVVCIFFL LLLLRFLAGQ PWKEYVATCL RTDMADITKS YLNAHGSFWV AESGNQVVGI 120
  121 VAALPVKDPP SGRKQLQLFR LSVSSQHRGQ GIAKALVRTV LQFARDQGYT DVVLETSTLQ 180
  181 QGAMTLYLGM GFQKTGQRFL TMFWRLVGIR TIQLKYPFPS A

Type	Start	End	Confidence
Cytoplasmic	1	42	0.81
Transmembrane Helix	43	74	0.86
Non-Cytoplasmic	75	221	0.49