YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFHIRQFQ ERDYEQVVDM FSRGMKEHIP TAFRHLLLLP RTLLLLLGVP LALVLVSGSW  60
   61 LLAVVCIFFL LPFLWFLAGQ PWKNYVSKCL HTDMADITKS YLSDRGSGFW VAESGGQIVG 120
  121 TVGALPVKDP PSGRKQLQLF RLSVSSQHRG QGIAKALVRT VLQFARDQGY TDVVLVTGLL 180
  181 QQGAVTLYYS MGFQKTGESF MDILTWLVDV SLIHFIYPLP SS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	54	0.78
Non-Cytoplasmic	55	58	0.61
Transmembrane Helix	59	78	0.91
Cytoplasmic	79	199	0.78
Transmembrane Helix	200	218	0.50
Non-Cytoplasmic	219	222	0.41