YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRFR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENETVSELN QTELPPQVAV ALEYQVVTIL LVVVICGLGI VGNIMVVLVV MRTKHMRTAT  60
   61 NCYLVSLAVA DLMVLVAAGL PNITDSIYGS WVYGYVGCLC ITYLQYLGIN ASSCSITAFT 120
  121 IERYIAICHP IKAQFLCTFS RAKKIIIFVW AFTSIYCMLW FFLLDLNIST YKDAIVISCG 180
  181 YKISRNYYSP IYLMDFGVFY VMPMILATVL YGFIARILFL NPIPSDPKEN SKTWKNDSTH 240
  241 QNKNMNLNTT NRCFNSTVSS RKQVTKMLAV VVILFALLWM PYRTLVVVNS FLSSPFQENW 300
  301 FLLFCRICIY LNSAINPVIY NLMSQKFRAA FRKLCNCKQK PTEKAANYSV ALNYSVIKES 360
  361 DRFSTELDDI TVTDTYVSTT KVSFDDTCLA SEKNGPSSCT YGYSLTAKQE KI

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.97
Transmembrane Helix	26	50	0.91
Cytoplasmic	51	59	0.89
Transmembrane Helix	60	81	0.92
Non-Cytoplasmic	82	90	0.77
Transmembrane Helix	91	109	0.75
Cytoplasmic	110	144	0.78
Transmembrane Helix	145	164	0.94
Non-Cytoplasmic	165	195	0.95
Transmembrane Helix	196	219	0.87
Cytoplasmic	220	263	0.98
Transmembrane Helix	264	285	0.86
Non-Cytoplasmic	286	299	0.90
Transmembrane Helix	300	323	0.85
Cytoplasmic	324	412	0.94