YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BRT1_RAT, BART1_RAT
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFWTAESP AWREVAGINK HFLDDSKYNS DEDLQSKLES SRVRRLGGGG SWSLGAQIVA  60
   61 RLAAVLGKEG GAFKLLLPMV VLCPALPILA SPPPGSLTSS LPMPSFCIFY PGIAQLSHTA 120
  121 NPTMQLYSLL SFYPAKYMEF DLNGNGDIDI MSLKRMLEKL GVPKTHLELK KLIRELSSGS 180
  181 EETFSYSDFL RMMLGKRSAI LRMILMYEEK NKNTRSQLVP QPRKLFLSCP NWRWI

Type	Start	End	Confidence
Cytoplasmic	1	70	0.74
Transmembrane Helix	71	90	0.76
Non-Cytoplasmic	91	235	0.61