YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7447745, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGPSNVSLI HGDTTLGLPE YKVVSVFLVL LVCTLGIVGN AMVILVVLTS RDMHTPTNCY  60
   61 LVSLALADLL VLLAAGLPNV SDSLVGHWIY GRAGCLGITY FQYLGINVSS FSILAFTVER 120
  121 YIAICHPLRA QTVCTVARAK RIIAGIWGVT SLYCLLWFFL VDLNVRDNQR LECGYKVPRG 180
  181 LYLPIYLLDF AVFFIGPLLV TLVLYGLIGR ILFQSPLSQE AWQKERQPHG QSEAAPGNCS 240
  241 RAKSSRKQAT RMLAVVVLLF AVLWTPYRTL VLLNSFVAQP FLDPWVLLFC RTCVYTNSAV 300
  301 NPVVYSLMSQ KFRAAFLKLC WCRAAGPQRR AARVLTSNYS AAQETSVGTE KM

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.92
Transmembrane Helix	26	48	0.94
Cytoplasmic	49	57	0.87
Transmembrane Helix	58	78	0.93
Non-Cytoplasmic	79	98	0.84
Transmembrane Helix	99	122	0.82
Cytoplasmic	123	141	0.89
Transmembrane Helix	142	161	0.94
Non-Cytoplasmic	162	189	0.90
Transmembrane Helix	190	209	0.93
Cytoplasmic	210	249	0.94
Transmembrane Helix	250	270	0.89
Non-Cytoplasmic	271	286	0.85
Transmembrane Helix	287	308	0.57
Cytoplasmic	309	352	0.65