YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTSS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.83
Transmembrane Helix	39	60	0.90
Cytoplasmic	61	68	0.84
Transmembrane Helix	69	90	0.81
Non-Cytoplasmic	91	101	0.80
Transmembrane Helix	102	123	0.93
Cytoplasmic	124	188	0.89
Transmembrane Helix	189	207	0.83
Non-Cytoplasmic	208	222	0.76
Transmembrane Helix	223	243	0.82
Cytoplasmic	244	288	0.97
Transmembrane Helix	289	310	0.89
Non-Cytoplasmic	311	323	0.78
Transmembrane Helix	324	344	0.88
Cytoplasmic	345	356	0.93
Transmembrane Helix	357	377	0.87
Non-Cytoplasmic	378	387	0.82
Transmembrane Helix	388	411	0.87
Cytoplasmic	412	471	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGERRVAG GSGSESPLLE GRRSTESEVY DDGTNTFFWR AHTLTVLFIL TCALGYVTLL  60
   61 EETPQDTAYN TKRGIVASIL VFLCFGVTQA KDGPFSRPHP AYWRFWLCVS VVYELFLIFI 120
  121 LFQTVHDGRQ FLKYVDPRLG VPLPERDYGG NCLIYDADNK TDPFHNIWDK LDGFVPAHFI 180
  181 GWYLKTLMIR DWWMCMIISV MFEFLEYSLE HQLPNFSECW WDHWIMDVLL CNGLGIYCGM 240
  241 KTLEWLSLKT YKWQGLWNIP TYKGKMKRIA FQFTPYSWVR FEWKPASSLH RWLAVCGIIL 300
  301 VFLLAELNTF YLKFVLWMPP EHYLVLLRLV FFVNVGGVAM REIYDFMDEL KPHRKLGQQA 360
  361 WLVAAITVTE LLIVVKYDPH TLTLSLPFYI SQCWTLGSIL VLTWTVWRFF LRDITMRYKE 420
  421 TRRQKQQSHQ AINNGDGHPG PEDDLPGTGT AEEEGTTNDG VPAEEGPSAA S