YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG14_RAT
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCVLTLAAS AGGLAVLLIV RLWAVLRSHP VTPRQSLGLL IVAGSGGHTA EILRLVGSLS  60
   61 GAYSPRHYVI AESDEMSAKK IHSLELARAQ NDSTTEHTEY YLHRIPRSRE VRQSWLSSVF 120
  121 TTLYSIWFSF PLVHRIKPDL VLCNGPGTCV PICVSALLLG ILGIKKVIIV YVESICRVET 180
  181 LSLSGKILWH LSDYFIVQWP TLKEKYPKSV YLGRIV

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.50
Transmembrane Helix	5	25	0.67
Cytoplasmic	26	113	0.63
Transmembrane Helix	114	133	0.74
Non-Cytoplasmic	134	141	0.75
Transmembrane Helix	142	164	0.68
Cytoplasmic	165	216	0.66