YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2347048
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAALETADI AIVALYFVLV VCIGFFAMWK SNRSTVSGYF LAGRSMTWVA IGASLFVSNI  60
   61 GSEHFIGLVG TGAASGFAVG AWEFNALLLL QLLGWVFIPI YIRSGVYTMP EYLSKRFGGH 120
  121 RIQVYFAALS LLLYIFTKLS VDLYSGALFI QESLGWNLYV SVILLIGMTA LLTVTGGLVA 180
  181 VIYTDTLQAL LMIIGALTLM VISMMKVGGF EEVKRRYMLA SPNVASILLT HNLSNTNSCM 240
  241 VHPKQDALKM LRDPTDEDVP WPGFILGQTP ASVWYWCADQ VIVQRVLAAK NIAHAKGSTL 300
  301 MAGFLKLLPM FIIVVPGMIS RILFVDDIAC INPEHCMQVC GSRAGCSNIA YPRLVMELVP 360
  361 VGLRGLMMAV MIAALMSDLA SIFNS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.63
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	39	0.60
Transmembrane Helix	40	66	0.72
Cytoplasmic	67	67	0.22
Transmembrane Helix	68	102	0.68
Non-Cytoplasmic	103	121	0.62
Transmembrane Helix	122	141	0.83
Cytoplasmic	142	157	0.64
Transmembrane Helix	158	181	0.90
Non-Cytoplasmic	182	188	0.60
Transmembrane Helix	189	210	0.91
Cytoplasmic	211	301	0.78
Transmembrane Helix	302	324	0.77
Non-Cytoplasmic	325	360	0.78
Transmembrane Helix	361	382	0.88
Cytoplasmic	383	385	0.65