YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGAT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLIAAYSG VLRGERRAEA ARSENKNKGS ALSREGSGRW GTGSSILSAL QDIFSVTWLN  60
   61 RSKVEKHLQV ISVLQWVLSF LVLGVACSVI LMYTFCTDCW LIAALYFTWL AFDWNTPKKG 120
  121 GRRSQWVRNW AVWRYFRDYF PIQLVKTHNL LTTRNYIFGY HPHGIMGLGA FCNFSTEATE 180
  181 VSKKFPGIRP YLATLAGNFR MPVLREYLMS GGICPVNRDT IDYLLSKNGS GNAIVIVVGG 240
  241 AAESLSSMPG KNAVTLRNRK GFVKLALRHG ADLVPTYSFG ENEVYKQVIF EEGSWGRWVQ 300
  301 KKFQKYIGFA PCIFHGRGLF SSDTWGLVPY SKPITTVVGE PITVPKLEHP TQKDIDLYHT 360
  361 MYMEALVKLF DNHKTKFGLP ETEVLEVN

Type	Start	End	Confidence
Cytoplasmic	1	70	0.80
Transmembrane Helix	71	93	0.84
Non-Cytoplasmic	94	98	0.54
Transmembrane Helix	99	116	0.67
Cytoplasmic	117	388	0.68