YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.85
Transmembrane Helix	24	43	0.93
Cytoplasmic	44	59	0.82
Transmembrane Helix	60	82	0.86
Non-Cytoplasmic	83	99	0.74
Transmembrane Helix	100	122	0.88
Cytoplasmic	123	135	0.87
Transmembrane Helix	136	155	0.88
Non-Cytoplasmic	156	171	0.70
Transmembrane Helix	172	192	0.90
Cytoplasmic	193	199	0.71
Transmembrane Helix	200	219	0.91
Non-Cytoplasmic	220	270	0.95
Transmembrane Helix	271	290	0.95
Cytoplasmic	291	309	0.81
Transmembrane Helix	310	328	0.90
Non-Cytoplasmic	329	380	0.93
Transmembrane Helix	381	403	0.91
Cytoplasmic	404	420	0.93
Transmembrane Helix	421	442	0.92
Non-Cytoplasmic	443	455	0.80
Transmembrane Helix	456	475	0.93
Cytoplasmic	476	482	0.84
Transmembrane Helix	483	504	0.88
Non-Cytoplasmic	505	523	0.90
Transmembrane Helix	524	546	0.89
Cytoplasmic	547	645	0.99
Transmembrane Helix	646	668	0.87
Non-Cytoplasmic	669	670	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGHVEEGSE LGEQKVLIDN PADILVIAAY FLLVIGVGLW SMFRTNRGTV GGYFLAGRSM  60
   61 VWWPVGASLF ASNIGSGHFV GLAGTGAASG LAVAGFEWNA LFVVLLLGWL FVPVYLTAGV 120
  121 ITMPQYLRKR FGGRRIRLYL SVLSLFLYIF TKISVDMFSG AVFIQQALGW NIYASVIALL 180
  181 GITMIYTVTG GLAALMYTDT VQTFVILAGA FILTGYAFHE VGGYSGLFDK YLGAVTSLTV 240
  241 SKDPAVGNIS STCYQPRPDS YHLLRDPVTG GLPWPALLLG LTIVSGWHWC SDQVIVQRCL 300
  301 AGKNLTHIKA GCILCGYLKL MPMFLMVMPG MISRILYPDE VACVVPEVCK RVCGTEVGCS 360
  361 NIAYPRLVVK LMPNGLRGLM LAVMLAALMS SLASIFNSSS TLFTMDIYTR LRPRAGDREL 420
  421 LLVGRLWVVF IVAVSVAWLP VVQAAQGGQL FDYIQSVSSY LAPPVSAVFV LALFVPRVNE 480
  481 KGAFWGLIGG LLMGLARLIP EFFFGTGSCV RPSACPAIFC RVHYLYFAII LFFCSGFLTL 540
  541 AISRCTAPIP QKHLHRLVFS LRHSKEERED LDAEELEGPA PPPVQNGCQE CAMGIEEVQS 600
  601 PAPGLLRQCL LWFCGMSKSG SGSPPPTTEE VAATTRRLED ISEDPSWARV VNLNALLMMT 660
  661 VAVFLWGFYA