YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.62
Transmembrane Helix	26	48	0.86
Non-Cytoplasmic	49	53	0.51
Transmembrane Helix	54	76	0.67
Cytoplasmic	77	78	0.48
Transmembrane Helix	79	98	0.74
Non-Cytoplasmic	99	104	0.64
Transmembrane Helix	105	126	0.87
Cytoplasmic	127	140	0.89
Transmembrane Helix	141	160	0.87
Non-Cytoplasmic	161	176	0.59
Transmembrane Helix	177	195	0.90
Cytoplasmic	196	204	0.57
Transmembrane Helix	205	223	0.90
Non-Cytoplasmic	224	273	0.94
Transmembrane Helix	274	293	0.91
Cytoplasmic	294	311	0.83
Transmembrane Helix	312	334	0.81
Non-Cytoplasmic	335	382	0.94
Transmembrane Helix	383	405	0.89
Cytoplasmic	406	422	0.91
Transmembrane Helix	423	444	0.92
Non-Cytoplasmic	445	455	0.85
Transmembrane Helix	456	477	0.90
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.92
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	640	0.99
Transmembrane Helix	641	663	0.88
Non-Cytoplasmic	664	665	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSTLSPAV TATDAPIQSY ERIRNAADIS VIVIYFVVVM AVGLWAMFST NRGTVGGFFL  60
   61 AGRSMVWWPI GASLFASNIG SGHFVGLAGT GAAAGIAMGG FEWNALVFVV VLGWLFVPIY 120
  121 IKAGVVTMPE YLRKRFGGKR IQIYLSVLSL LLYIFTKISA DIFSGAIFIN LALGLDIYLA 180
  181 IFILLAITAL YTITGGLAAV IYTDTLQTAI MLVGSFILTG FAFREVGGYE AFMDKYMKAI 240
  241 PTLVSDGNIT VKEECYTPRA DSFHIFRDPI TGDMPWPGLI FGLSILALWY WCTDQVIVQR 300
  301 CLSAKNMSHV KAGCTLCGYL KLLPMFLMVM PGMISRILYT DKIACVLPSE CKKYCGTPVG 360
  361 CTNIAYPTLV VELMPNGLRG LMLSVMMASL MSSLTSIFNS ASTLFTMDIY TKIRKGASEK 420
  421 ELMIAGRLFI LVLIGISIAW VPIVQSAQSG QLFDYIQSIT SYLGPPIAAV FLLAIFCKRV 480
  481 NEPGAFWGLI LGFLIGISRM ITEFAYGTGS CMEPSNCPKI ICGVHYLYFA IILFAISVVT 540
  541 VLVISLLTKP IPDVHLYRLC WSLRNSTEER IDLDAGEEEP VEEDPKDTIE IDAEAPQKEK 600
  601 GCFRKAYDLF CGLDQDKGPK MTKEEEEAMK LKMTDTSEKP LWRTVVNING IILLAVAVFC 660
  661 HAYFA