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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSCWDTAVL PCALLGCLLL TGYCSGSKLK GPELSLKGTQ HVMQAGQTLF LKCRGEAAHS  60
   61 WSLPTTVSQE DKKLSVTRSA CGRNNRQFCS TLTLNMAQAN HTGLYSCRYL PKSTSKEKKM 120
  121 ESAIYIFVSD AGSPFIEMHS DIPKLVHMTE GRELIIPCRV TSPNITVTLK KFPFDALTPD 180
  181 GQRIAWDSRR GFIIANATYK EIGLLTCEAT VNGHLYQTSY LTHRQTNTIL DVQISPPSPV 240
  241 RFLRGQTLVL NCTVTTDLNT RVQMSWNYPG KATKRASIRQ RIDQSNPHSN VFHSVLKINN 300
  301 VESRDKGLYT CRVKSGSSFR TFNTSVHVYE KGFISVKHRK QQVQETIAGK RSHRLSMKVK 360
  361 AFPSPEVVWL KDGVPATEKS ARYSVHGYSL IIKDVTAEDA GDYTILLGIK QSKLFRNLTA 420
  421 TLIVNVKPQI YEKSVSSLPS PPLYPLGSRQ VLTCTVYGIP QPTIKWLWHP CHYNHSKERN 480
  481 DFCFGSEESF ILDSSSNIGN RIEGITQRMM VIEGTNKTVS TLVVADSRTP GSYSCKAFNK 540
  541 IGTVERDIRF YVTDVPNGFH VSLEKIPTEG EDLKLSCVVS KFLYRDITWI LLRTVNNRTM 600
  601 HHSISKQKMA TTQDYSITLN LVIKNVSLED SGTYACRARN IYTGEEILRK TEVLVRDLEA 660
  661 PLLLQNLSDH EVSISGSTTL DCQARGVPAP QITWFKNNHK IQQEPGIILG PGNSTLFIER 720
  721 VTEEDEGVYR CRATNQKGVV ESSAYLTVQG TSDKSNLELI TLTCTCVAAT LFWLLLTLFI 780
  781 RKLKRSSSEV KTDYLSIIMD PDEVPLDEQC ERLPYDASKW EFARERLKLG KSLGRGAFGK 840
  841 VVQASAFGIK KSPTCRTVAV KMLKEGATAS EYKALMTELK ILTHIGHHLN VVNLLGACTK 900
  901 QGGPLMVIVE YCKYGNLSNY LKSKRDFFCL NKDAALHMEP KKEKLEPDLE QDQKPRLDSV 960
  961 SSSESFTSSG FQEDKSVSDV EGGEDYSEIS KQPLTMEDLI SYSFQVARGM EFLSSRKCIH1020
 1021 RDLAARNILL SENNVVKICD FGLARDIYKN PDYVRRGDTR LPLKWMAPES IFDKVYSTKS1080
 1081 DVWSYGVLLW EIFSLGGSPY PGVQMDEDFC SRLKEGMRMR TPEYATPEIY QIMLDCWHKD1140
 1141 PKERPRFAEL VEKLGDLLQA NVQQDGKDYI PLNAILTRNS GFTYSVPTFS EDFFKDGFTD1200
 1201 PKFHSGSSDD VRYVNAFKFM SLERIKTFEE LSPNATSMFE DYHLDTSSLL TSPLLKRFTW1260
 1261 TETKPKASMK IDLRITSKSK EAGLSDLPGP SFCFSSCGHI RPVRQEDEDD PELGKESCCS1320
 1321 PPPDYNSVVL YSSPPA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle