YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABHD5_RAT
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAMAAEEEV DSADAGGGSG WLTGWLPTWC PTSTSHLKEA EEKMLKCVPC TYKKEPVRIS  60
   61 NGNSIWTLMF SHNMSSKTPL VLLHGFGGGL GLWALNFEDL STDRPVYAFD LLGFGRSSRP 120
  121 RFDSDAEEVE NQFVESIEEW RCALRLDKMI LLGHNLGGFL AAAYSLKYPS RVSHLILVEP 180
  181 WGFPERPDLA DQERPIPVWI RALGAALTPF NPLAGLRIAG PFGLSLVQRL RPDFKRKYSS 240
  241 MFEDDTVTEY IYHCNVQTPS GETAFKNMTI PYGWAKRPML QRIGGLHPDI PVSVIFGARS 300
  301 CIDGNSGTSI QSLRPKSYVK TIAILGAGHY VYADQPEEFN QKVKEICHTV D

Type	Start	End	Confidence
Cytoplasmic	1	77	0.60
Transmembrane Helix	78	95	0.45
Non-Cytoplasmic	96	351	0.71