YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAMP2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPLSGYGS KLVLLFLFLG AVRSDALKLN LTDSKGTCLY AEWEMNFTIT YEALKVNETV  60
   61 TITVPDKVTY NGSSCGDDKN GAKIMIQYGS TLSWAVNFTK EASQYFINNI TLSYNTNDTK 120
  121 TFPGAVPKGI LTVIIPVGSQ LPLGVIFKCS SVLTFNLSPV VQHYWGIHLQ AFVQNGTVSK 180
  181 HEQVCKEDKT ATTVAPIIHT TVPSPTTTLT PTSIPVPTPT VGNYTISNGN ATCLLATMGL 240
  241 QLNITEEKVP FIFNINPATT NFTGSCQPQT AQLRLNNSQI KYLDFIFAVK NEKRFYLKEV 300
  301 NVNMYLANGS AFHVSNNNLS FWDAPLGSSY MCNKEQVVSV SRTFQINTFN LKVQPFNVTK 360
  361 GEYSTAQDCS ADEDNFLVPI AVGAALGGVL ILVLLAYFIG LKRHHTGYEQ F

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	379	0.99
Transmembrane Helix	380	401	0.92
Cytoplasmic	402	411	0.98