YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	55	0.94
Non-Cytoplasmic	56	64	0.73
Transmembrane Helix	65	85	0.95
Cytoplasmic	86	97	0.85
Transmembrane Helix	98	123	0.79
Non-Cytoplasmic	124	160	0.94
Transmembrane Helix	161	183	0.88
Cytoplasmic	184	191	0.83
Transmembrane Helix	192	210	0.96
Non-Cytoplasmic	211	244	0.92
Transmembrane Helix	245	268	0.85
Cytoplasmic	269	280	0.90
Transmembrane Helix	281	305	0.85
Non-Cytoplasmic	306	331	0.91
Transmembrane Helix	332	358	0.77
Cytoplasmic	359	378	0.91
Transmembrane Helix	379	398	0.95
Non-Cytoplasmic	399	405	0.82
Transmembrane Helix	406	427	0.91
Cytoplasmic	428	488	0.98
Transmembrane Helix	489	511	0.96
Non-Cytoplasmic	512	519	0.85
Transmembrane Helix	520	542	0.94
Cytoplasmic	543	552	0.88
Transmembrane Helix	553	573	0.93
Non-Cytoplasmic	574	580	0.81
Transmembrane Helix	581	601	0.92
Cytoplasmic	602	624	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCKNLLSLG QQMLRRKVVD CSREESRLSR CLNTYDLVAL GVGSTLGAGV YVLAGAVARE  60
   61 NAGPAIVISF LIAALASVLA GLCYGEFGAR VPKTGSAYLY SYVTVGELWA FITGWNLILS 120
  121 YIIGTSSVAR AWSATFDELI GKPIGEFSRQ HMALNAPGVL AQTPDIFAVI IIIILTGLLT 180
  181 LGVKESAMVN KIFTCINVLV LCFIMVSGFV KGSIENWQLT ENKSSPLCGN NDTNVKYGEG 240
  241 GFMPFGFSGV LSGAATCFYA FVGFDCIATT GEEVKNPQKA IPVGIVASLL ICFIAYFGVS 300
  301 AALTLMMPYF CLDTDSPLPG AFKYRGWEEA KYAVAVGSLC ALSTSPLGSM FPMPRVIYAM 360
  361 AEDGLLFKFL AKINDRTKTP IIATVTSGAI AAVMAFLFEL KDLVDLMSIG TLLAYSLVAA 420
  421 CVLVLRYQPE QPNLVYQMAR TTDELDQVDQ NEMVSASESQ TGFLPAAEKF SLKTILSPKN 480
  481 MEPSKFSGLI VNISAGLLAV LIITVCIVAV LGREALAEGT LWAVFVMTGS VLLCMLVTGI 540
  541 IWRQPESKTK LSFKVPFVPV LPVLSIFVNI YLMMQLDQGT WVRFAVWMLI AFAIYFGYGV 600
  601 WHSEEASLAA GQAKTPDSNL DQCK